I mean I have many focal stacks and I would like to output the aligned layers for every single focal stack. Using something like the batch process mode that gives me output all in focus images.

Then, is there any way to batch process layers?

Ahh I got it to work! Thanks. Also is there a argument to output the layers (what the Export layers button would do).

Thanks

open /Applications/HeliconFocus.app/ --args /Users/sai/Documents/Data/

I am doing something like this where Data is the folder containing my stack... Its not working. Any help?

I see that helicon focus command line can be done on Windows. But I don't see a way for it to be done on mac? Is this supported?